### Inhalt des Dokuments

## Highlights

- Top: Sketch of a generic oscillatory system subject to feedback. Bottom: Feedback strength and feedback delay time dependence of the real and imaginary parts of the dominant Floquet exponents of a Stuart-Landau system with two feedback terms.
- © Copyright??

**Suppression of noise-induced modulations in multidelay systems**

Many physical systems involve time-delayed feedback or coupling. In such delay-systems noise can give rise to undesirable oscillations at frequencies resonant to the delay times. We investigate how an additional feedback term can suppress noise-induced modulations in delay-systems with self-feedback that exhibit deterministic oscillatory dynamics. For the prototypical example of a Stuart-Landau oscillator we derive an equation which describes how the stability of the oscillating solutions depends on the feedback delay times. The stability of the solutions is related to the noise-induced modulations, hence this equation can be used to find feedback conditions for which the noise-induced modulations are reduced. For more complex systems it is sometimes not possible to derive an equivalent analytic expression, however, we show that under certain conditions the dependence on the feedback delays time, of the stability of various oscillatory systems, is ubiquitous.

A real world example for which this work is of relevance is a semiconductor passively mode-locked laser. Such a laser produces a train of light pulses and for applications it is generally desired that the pulses arrive at highly regular time intervals. However, the regularity of the pulse trains is invariably diminished by noise sources within the laser. With one feedback loop the regularity of the pulse trains can be improved on long time scales, however this also introduces a noise-induced modulation of the time between consecutive pulses with a period given approximately by the feedback delay time. By adding a second feedback loop and using the expression we found for the delay time dependence of the stability of the pulsed solutions, the length of the second feedback loop can be chosen such that the noise-induced modulations are suppression, thereby improving the temporal regularity of the pulse train.

L . C. Jaurigue, E. Schöll, and K. Lüdge,*Suppression of Noise-Induced Modulations in Multidelay Systems*,

Phys. Rev. Lett.

**117**, 154101 (2016).

______________________________________________________________________

- Left - The ancient idea of the centrifugal governor (top, from Wikipedia) was transferred to modern electronic nano-devices (bottom). Right - Whereas without control the shot noise (dashed curve) grows indefinitely in time, with control it saturates and reaches a constant value inversely proportional to the feedback strength. Experimental results (dotted lines) and theory (solid lines) correspond perfectly. Note the logarithmic scaling for the plot.
- © Copyright??

**Strong suppression of shot noise in a feedback-controlled single-electron transistor**

In ordinary electric devices there are so many electrons flowing through the cable that it suffices to characterize only their average behavior by a single quantity: the electric current. But due to the enormous progress in nanotechnology it is now possible to detect the motion of single electrons in very small devices. At this resolution, however, it does not suffice to characterize the device simply based on its average current; in contrast, the transport of electrons can only be described probabilistically. The dominant contribution to this inherent statistical nature is known as ”shot noise”, which limits our ability to build reliable and easily predictable nanotechnological devices.

We succeeded for the first time to control and almost completely suppress the shot noise due to a real-time feedback loop applied to the system. The basic idea behind this experiment can be traced back to an ancient machine devised by James Watt known as the centrifugal governor. The centrifugal governor controls the speed of a heat engine by self-regulating the amount of fuel supplied with respect to a fixed reference value. Consequently, it is possible to stabilize the motion of the engine independent of the environmental conditions, i.e., the effect of inevitable noise in the fuel supply is suppressed to a minimum. An analogous effect was now predicted and experimentally confirmed in a collaboration of researchers from the GRK and an experimental group from the university of Hannover.

T. Wagner, P. Strasberg, J. C. Bayer, E. P. Rugeramigabo, T. Brandes, and R. J. Haug,*Strong suppression of shot noise in a feedback-controlled single-electron transistor*,

Nat. Nanotechnol.

**12**, (2016).

______________________________________________________________________

- Distribution of active Brownian particles (ABPs) and and run-and-tumble particles (RTPs) in a Matryoshka-like maze in the steady state. ABPs accumulate at the rim, whereas RTP are encountered all through the maze.
- © Copyright??

**Active Brownian particles and run-and-tumble particles separate inside a maze**

Microorganisms as well as artificial microswimmers need to navigate through confined environments. Two important models for microswimmers exist: active Brownian particles (ABPs) move with constant speed and continuously change their directions, while for run-and-tumble particles (RTPs) straight runs are interrupted by abrupt changes in direction.

We numerically study how both types of swimmers behave in various two-dimensional mazes. We demonstrate that ABPs can be separated from RTPs by means of geometrical confinement. Especially Matryoshka-like mazes with nested circular shells are efficient filters: ABPs quickly escape the center of the maze and accumulate at the outer rim. In contrast, RTBs can access the inner regions when starting from the fringe of the maze and are more evenly spread across the maze in the steady state. We corroborate this finding using a rate theory. Our results suggest that Matryoshka-like mazes separate different types of active particles from each other, which has potential technological and biomedical applications.

M. Khatami, K. Wolff, O. Pohl, M. R. Ejtehadi, and H. Stark,*Active Brownian particles and run-and-tumble particles separate inside a maze*,

Sci. Rep. 6, 37670 (2016).

______________________________________________________________________

- Emergence of a rotational collective motion in a circular confined domain. In the red region, the adhesive bond formation to the substrate is reduced. Green denotes the concentration of adhesion sites, blue measures the absolute value of actin orientation
- © Copyright??

**Collisions of deformable cells lead to collective migration**

Collective migration of eukaryotic cells plays a fundamental role in tissue growth, wound healing and immune response. We present a model based on reaction-diffusion equations to describe the movement of many self-organized, interacting cells crawling on a layer of substrate. The model accounts for the 'propulsion engine' of each cell in form of acto-myosin dynamics, as well as for adhesion of cells to the substrate and to each other. It predicts that collective cell migration emerges spontaneously as a result of inelastic collisions between neighboring cells: collisions lead to a mutual alignment of the cell velocities and to the formation of coherently-moving multi-cellular clusters. As a result, cells migrate collectively in the same direction in unbounded domains or perform concerted rotation inside a circular domain.

J. Löber, F. Ziebert, and I. S. Aranson,*Collisions of deformable cells lead to collective migration*,

Sci. Rep. **5**, 9172 (2015).

______________________________________________________________________

## 2019

*,*

Cooperative efficiency boost for quantum heat engines

Cooperative efficiency boost for quantum heat engines

arXiv:1809.02564

*,*

Mutual coupling and synchronization of optically coupled quantum-dot micropillar lasers at ultra-low light levels

Mutual coupling and synchronization of optically coupled quantum-dot micropillar lasers at ultra-low light levels

arXiv:1808.01483

N. Martensen and G. Schaller,*Transmission from reverse reaction coordinate mappings*,

arXiv:1809.10529

A. Nazir and G. Schaller,*The reaction coordinate mapping in quantum thermodynamics*,

in “Thermodynamics in the quantum regime - Recent Progress and Outlook” edited by F. Binder, L. A. Correa, C. Gogolin, J. Anders, and G. Adesso, Springer International Publishing (2019). arxiv.org:1805.08307

H. Reinken, S. Heidenreich, M. Bär, and S. H. L. Klapp,*Asymmetric pattern formation in microswimmer suspensions induced by orienting fields*,

arXiv:1809.07134

## 2018

H. Stark,*Artificial Chemotaxis of Self-Phoretic Active Colloids: Collective Behavior*,

Acc. Chem. Res. **51**, 2681 (2018).

S. Holzinger, C. Redlich, B. Lingnau, M. Schmidt, M. von Helversen, J. Beyer, C. Schneider, M. Kamp, S. Höfling, K. Lüdge, X. Porte, and S. Reitzenstein,*Tailoring the mode-switching dynamics in quantum-dot micropillar lasers via time-delayed optical feedback*,

Opt. Express

**26**, 22457 (2018).

S. Restrepo, J. Cerrillo, P. Strasberg, and G. Schaller,*From quantum heat engines to laser cooling: Floquet theory beyond the Born-Markov approximation*,

New J. Phys.

**20**, 053063 (2018).

*Thermoelectric performance of topological boundary modes*,

Phys. Rev. B

**80**, 035132 (2018).

G. Schaller, J. Cerrillo, G. Engelhardt, and P. Strasberg,*Electronic Maxwell demon in the coherent strong-coupling regime**,*

Phys. Rev. B **97**, 195104 (2018).

P. Strasberg, G. Schaller, T. L. Schmidt, and M. Esposito,*Fermionic reaction coordinates and their application to an autonomous Maxwell demon in the strong coupling regime*,

Phys. Rev. B **97**, 205405 (2018).

S. Zimmermann, W. Kopylov, and G. Schaller,*Wiseman-Milburn Control for the Lipkin-Meshkov-Glick Model*,

J. Phys. A: Math. Theor. **51**, 385301 (2018).

J. Hansing, J. R. Duke, E. B. Fryman, J. E. DeRouchey, and R. R. Netz,*Particle Diffusion in Polymeric Hydrogels with Mixed Attractive and Repulsive Interactions*,

Nano Lett.

**18**, 5248 (2018).

*Systematic bottom-up theory for the viscoelastic response of worm-like chain networks*,

EPL

**123**, 58002 (2018).

J. Hansing and R. R. Netz,*Hydrodynamic Effects on Particle Diffusion in Polymeric Hydrogels with Steric and Electrostatic Particle- Gel Interactions*,

Macromolecules **51**, 7608 (2018).

F. Faulstich, M. Kraft, and A. Carmele,*Unravelling Mirror Properties in Time-Delayed Quantum Feedback Scenarios*,

J. Mod. Opt. **65**, 1323 (2018).

*On the relation between filament density, force generation and protrusion rate in mesenchymal cell motility*,

Mol. Biol. Cell

**29**, 2674 (2018).

S. Dolati,*How filament density impacts force generation and protrusion rate of lamellipodium in motile cells*,

Biophys. J. **114**, 325a (2018).

*Control of transversal instabilities in reaction-diffusion systems*,

New J. Phys.

**20**, 053034 (2018).

M. Seyrich, Z. Alirezaeizanjani, C. Beta, and H. Stark,*Statistical parameter inference of bacterial swimming strategies,*

New J. Phys. **20**, 103033 (2018).

D. A. Kulawiak, J. Löber, M. Bär, and H. Engel,*Oscillatory motion of a droplet in an active poroelastic two-phase model*,

J. Phys. D: Appl. Phys.

**52**, 014004 (2018).

S. Helmrich, R. Schneider, A. W. Achtstein, A. Arora, B. Herzog, S. M. de Vasconcellos, M. Kolarczik, O. Schöps, R. Bratschitsch, U. Woggon, and N. Owschimikow,*Exciton-phonon coupling in mono- and bilayer MoTe _{2}*,

2D Mater.

**5**, 2827 (2018).

A. Steinhoff, M. Florian, A. Singh, K. Tran, M. Kolarczik, S. Helmrich, A. W. Achtstein, U. Woggon, N. Owschimikow, F. Jahnke, and X. Li,*Biexciton fine structure in monolayer transition metal dichalcogenides*,

accepted at Nature Physics (2018).

J. Hansing, J. R. Duke, E. B. Fryman, J. E. DeRouchey, and R. R. Netz,*Particle Diffusion in Polymeric Hydrogels with Mixed Attractive and Repulsive Interactions*,

accepted for publication at Nano Lett., (2018).

J. Hansing and R. R. Netz,*Particle Trapping Mechanisms Are Different in Spatially Ordered and Disordered Interacting Gels*,

Biophys. J. **114**, 2653 (2018).

M. Richter, R. Singh, Mark Siemens, and S. T. Cundiff,*Deconvolution of optical multidimensional coherent spectra*,

Sci. Adv. **4**, eaar7697 (2018).

B. Robertson, H. Stark, and R. Kapral,*Dynamics and correlations in systems of pinned, chemically self-propelled sphere-dimer nanorotors*,

Chaos **28**, 045109 (2018).

M. Kolarczik, C. Ulbrich, P. Geiregat, Y. Zhu, L.Sagar, A. Singh, B. Herzog, A.W. Achtstein, X. Li, D. van Thourhout, Z. Hens, N. Owschimikow, and U. Woggon,*Sideband pump-probe technique resolves nonlinear modulation response of PbS/CdS quantum dots on a silicon nitride waveguide*,

APL Photonics** 3**, 016101 (2018).

H. Reinken, S. H. L. Klapp, M. Bär, and S. Heidenreich,*Derivation of a hydrodynamic theory for mesoscale dynamics in microswimmer suspensions*,

Phys. Rev. E **97**, 022613 (2018).

F. Rühle, J. Blaschke, J.-T. Kuhr, and H. Stark,*Gravity-induced dynamics of a squirmer microswimmer in wall proximity*,

New J. Phys. **20**, 025003 (2018).

G. Engelhardt and G. Schaller,*Maxwell's demon in the quantum-Zeno regime and beyond*,

New J. Phys. **20**, 023011 (2018).

## 2017

M. Buser, J. Cerrillo, G. Schaller, and J. Cao,*Initial system-environment correlations via the transfer tensor method*,

Phys. Rev. A **96**, 062122 (2017).

V. Delmonte, J. F. Specht, T. Jakubczyk, S. Höfling, M. Kamp, C. Schneider, W. Langbein, G. Nogues, M. Richter, and J. Kasprzak,*Coherent coupling of individual quantum dots measured with phase-referenced two-dimensional spectroscopy: Photon echo versus double quantum coherence*,

Phys. Rev. B

**96**, 041124(R) (2017).

M. Hintsche, V. Waljor, R. Großmann, M. J. Kühn, K. M. Thormann, F. Peruani, C. Beta,*A polar bundle of flagella can drive bacterial swimming by pushing, pulling, or coiling around the cell body*,

Sci. Rep. **7**, 16771 (2017).

K. Hao, J. F. Specht, P. Nagler, L. Xu, K. Tran, A. Singh, C. K. Dass, C. Schüller, T. Korn, M. Richter, A. Knorr, X. Li, and G. Moody,*Neutral and charged inter-valley biexcitons in monolayer MoSe2*,

Nat. Commun. **8**, 15552 (2017) .

C. Redlich, B. Lingnau, H. Huang, R, Raghunathan, K. Schires, P. J. Poole, F. Grillot, and K. Lüdge, *Linewidth rebroadening in quantum dot semiconductor lasers*,

IEEE J. Sel. Top. Quantum Electron. **23**, 1901110 (2017).

T. Winzer, M. Mittendorff, S. Winnerl, H. Mittenzwey, R. Jago, M. Helm, E. Malic, and A. Knorr,*Unconventional double-bended saturation of carrier occupation in optically excited graphene due to many-particle interactions*,

Nat. Commun. **8**, 15042 (2017).

P. Buran, M. Bär, S. Alonso, and T. Niedermayer,*Control of electrical turbulence by periodic excitation of cardiac tissue,*

Chaos **27**, 113110 (2017).

A. Mu, B. K. Agarwalla, G. Schaller, and D. Segal,*Qubit absorption refrigerator at strong coupling*,

New J. Phys. **19**, 123034 (2017).

L. C. Jaurigue, B. Krauskopf, and K. Lüdge, *Multipulse dynamics of a passively mode-locked semiconductor laser with delayed optical feedback*,

Chaos **27**, 114301 (2017).

S. Alonso, M. Radszuweit, H. Engel, and M. Bär,*Mechanochemical pattern formation in simple models of active viscoelastic fluids and solids*,

J. Phys. D **50**, 434004 (2017).

J. F. Totz, J. Rode, M. R. Tinsley, K. Showalter, and H. Engel,*Spiral wave chimera states in large populations of coupled chemical oscillators*,

accepted at Nat. Phys. (2017).

M. Dennison, R. Kapral, and H. Stark,*Diffusion in systems crowded by active force-dipole molecules*,

Soft Matter **13**, 3741 (2017).

P. Kanehl and H. Stark,*Self-organized velocity pulses of dense colloidal suspensions in microchannel flow*,

Phys. Rev. Lett. **119**, 018002 (2017).

W. Kopylov, G. Schaller, and T. Brandes, *Non-Adiabatic Dynamics of the Excited States for the Lipkin-Meshkov-Glick Model,*

Phys. Rev. E **96**, 012153 (2017).

G. G. Giusteri, F. Recrosi, G. Schaller, and G. L. Celardo,*Interplay of different environments in open quantum systems: Breakdown of the additive approximation*,

Phys. Rev. E **96**, 012113 (2017).

M. Stange, M. Hintsche, K. Sachse, M. Gerhardt, A Valleriani, and C. Beta,*Analyzing the spatial positioning of nuclei in polynuclear giant cells*,

J. Phys. D **50**, 464001 (2017).

J.-T. Kuhr, J. Blaschke, F. Rühle, and H. Stark,*Collective sedimentation of squirmers under gravity*,

Soft Matter **13**, 7548 (2017).

G. Engelhardt, M. Benito, G. Platero, and T. Brandes,*Topologically Enforced Bifurcations in Superconducting Circuits*,

Phys. Rev. Lett. **118**, 197702 (2017).

M. Hayn and T. Brandes,*Thermodynamics and superradiant phase transitions in a three-level Dicke model*,

Phys. Rev. E **95**, 012153 (2017).

P. Strasberg, G. Schaller, T. Brandes, and M. Esposito,*Quantum and Information Thermodynamics: A Unifying Framework Based on Repeated Interactions*,

Phys. Rev. X **7**, 021003 (2017).

T. Brandes,*A feedback scheme for control of single electron transport*,

Phys. Status Solidi B **254**, 1600548 (2017).

T. Wagner, P. Strasberg, J. C. Bayer, E. P. Rugeramigabo, T. Brandes, and R. J. Haug,*Strong suppression of shot noise in a feedback-controlled single-electron transistor*,

Nat. Nanotechnol. **12**, 218 (2017).

O. Pohl, M. Hintsche, Z. Alirezaeizanjani, M. Seyrich, C. Beta, and H. Stark,*Inferring the chemotactic strategy of P. putida and E. coli using modified Kramers-Moyal coefficients*,

PLoS Comput. Biol. **13**, e1005329 (2017).

M. Zeitz, K. Wolff, and H. Stark,*Active Brownian particles moving in a random Lorentz gas*,

Eur. Phys. J. E **40**, 23 (2017).

-- Front Cover --

G. Schaller,*Feedback-charging a metallic island*,

Phys. Status Solidi B, 1600549 (2017).

## 2016

A. Singh, K. Tran, M. Kolarczik, J. Seifert, Y. Wang, K. Hao, D. Pleskot, N. M. Gabor, S. Helmrich, N. Owschimikow, U. Woggon, and X. Li,*Long-Lived Valley Polarization of Intravalley Trions in Monolayer WSe _{2}*,

Phys. Rev. Lett.

**117**, 257402 (2016).

G. B. Cuetara, M. Esposito, and G. Schaller,*Quantum Thermodynamics with Degenerate Eigenstate Coherences*,

Entropy

**18**, 447 (2016).

J. Cerrillo, M. Buser, and T. Brandes,*Non-equilibrium quantum transport coefficients and the transient dynamics of full counting statistics in the strong coupling and non-Markovian regimes*,

Phys. Rev. B **94**, 214308 (2016).

S. Restrepo, J. Cerrillo, V. M. Bastidas, D. G. Angelakis, and T. Brandes,*Driven open quantum systems and Floquet stroboscopic dynamics*,

Phys. Rev. Lett. **117**, 250401 (2016).

D. A. Kulawiak, B. A. Camley, W.-J. Rappel,*Modeling Contact Inhibition of Locomotion of Colliding Cells Migrating on Micropatterned Substrates*,

PLoS Comput. Biol. 12, e1005239 (2016).

R. Großmann, F. Peruani, and M. Bär,*Mesoscale pattern formation of self-propelled rods with velocity reversal,*

Phys. Rev. E, **94**, 050602, (2016).

M. Khatami, K. Wolff, O. Pohl, M. R. Ejtehadi, and H. Stark,*Active Brownian particles and run-and-tumble particles separate inside a maze*,

Sci. Rep. 6, 37670 (2016).

B. Herzog, B. Lingnau, M. Kolarczik, Y. Kaptan, D. Bimberg, A. Maaßdorf, U. W. Pohl, R. Rosales, J.-H. Schulze, A. Strittmatter, M. Weyers, U. Woggon, K. Lüdge, and N. Owschimikow,*Strong amplitude-phase coupling in submonolayer-quantum-dots*,

Appl. Phys. Lett. **109**, 201102 (2016).

C.Beta, *To turn or not to turn?*,

New J. Phys. **18**, 051003 (2016).

R. Lugo-Frias, H. Reinken, S. H. L. Klapp,*Shear banding in nematogenic fluids with oscillating orientational dynamics*,

Eur. Phys. J. E **39**, 88 (2016).

B. Lingnau, K. Lüdge, B. Herzog, M. Kolarczik, Y. Kaptan, U. Woggon, and N. Owschimikow,*Ultrafast gain recovery and large nonlinear optical response in submonolayer quantum dots*,

Phys. Rev. B **94**, 014305 (2016).

M. Schmitt and H. Stark,*Active Brownian motion of emulsion droplets: Coarsening dynamics at the interface and rotational diffusion*,

Eur. Phys. J. E **39**, 80 (2016).

P. Strasberg, G. Schaller, N. Lambert, and T. Brandes,*Nonequilibrium thermodynamics in the strong coupling and non-Markovian regime based on a reaction coordinate mapping*,

New J. Phys. **18**, 073007 (2016).

L . C. Jaurigue, E. Schöll, and K. Lüdge,*Suppression of Noise-Induced Modulations in Multidelay Systems*,

Phys. Rev. Lett. **117**, 154101 (2016).

G. Engelhardt, M. Benito, G. Platero, and T. Brandes,*Topological instabilities in ac-driven bosonic systems*,

Phys. Rev. Lett. **117**, 045302 (2016).

O. Nikiforov, L. C. Jaurigue, L. Drzewietzki, K. Lüdge, and S. Breuer,*Experimental demonstration of change of dynamical properties of a passively mode-locked semiconductor laser subject to dual optical feedback by dual full delay-range tuning*,

Opt. Express **24**, 14301 (2016).

S. Heidenreich, J. Dunkel, S. H. L. Klapp, and M. Bär,*Hydrodynamic length-scale selection and effective viscosity in microswimmer suspensions*,

Phys. Rev. E

**94**, 020601(R) (2016).

G. Engelhardt, G. Schaller, and T. Brandes,*Bosonic Josephson effect in the Fano-Anderson model*,

Phys. Rev. A **94**, 013608 (2016).

J. Münch, D. Alizadehrad, S. B. Babu, and H. Stark,*Taylor line swimming in microchannels and cubic lattices of obstacles*,

Soft Matter **12**, 7350 (2016).

J. C. König-Otto, M. Mittendorff, T. Winzer, F. Kadi, E. Malic, A. Knorr, C. Berger, W. A. de Heer, A. Pashkin, H. Schneider, M. Helm, and S. Winnerl,*Slow Noncollinear Coulomb Scattering in the Vicinity of the Dirac Point in Graphene*,

**Phys. Rev. Lett.**

**117**, 087401 (2016).

C. W. Wächtler, P. Strasberg, and T. Brandes,*Stochastic thermodynamics based on incomplete information: generalized Jarzynski equality with measurement errors with or without feedback*,

New J. Phys. **18**, 113042 (2016).

J. Hansing, C. Ciemer, W. K. Kim, X. Zhang, J. E. DeRouchey, and R. R. Netz,*Nanoparticle filtering in charged hydrogels: Effects of particle size, charge asymmetry and salt concentration*,

Eur. Phys. J. E Soft Matter **39**, 53 (2016).

S. H. L. Klapp,*Collective dynamics of dipolar and multipolar colloids: from passive to active systems*,

Curr. Opin. Colloid Interface Sci. **21**, 76 (2016).

A. B. Yener and S. H. L. Klapp,*Self-assembly of three-dimensional ensembles of magnetic particles with laterally shifted dipoles*,

Soft Matter **12**, 2066 (2016).

R. Lugo-Frias and S. H. L. Klapp,*Binary mixtures of rod-like colloids under shear: microscopically-based equilibrium theory and order--parameter dynamics*,

J. Phys. Condens. Matter **28**, 244022 (2016).

T. Brandes and C. Emary,*Feedback control of waiting times*,

Phys. Rev. E **93**, 042103 (2016).

M. T. Mihnev, F. Kadi, C. J. Divin, T. Winzer, S. Lee, C.-H. Liu, Z. Zhong, C. Berger, W. A. de Heer, E. Malic, A. Knorr, and T. B. Norris,*Microscopic origins of the terahertz carrier relaxation and cooling dynamics in graphene*,

Nat. Commun. **7**, 11617 (2016).

R. Großmann, F. Peruani, and M. Bär,*Superdiffusion, large-scale synchronization, and topological defects*,

Phys. Rev. E **93**, 040102(R) (2016).

L. C. Jaurigue, O. Nikiforov, E. Schöll, S. Breuer, and K. Lüdge,*Dynamics of a passively mode-locked semiconductor laser subject to dual-cavity optical feedback*,

Phys. Rev. E **93**, 022205 (2016).

E. Nakouzi, J. F. Totz, Z. Zhang, O. Steinbock, and H. Engel,*Hysteresis and drift of spiral waves near heterogeneities: From chemical experiments to cardiac simulations*,

Phys. Rev. E **93**, 022203 (2016).

S. Alonso, U. Strachauer, M. Radszuweit, M. Bär, and M. J. B. Hauser,*Oscillations and uniaxial mechanochemical waves in a model of an active poroelastic medium: Application to deformation patterns in protoplasmic droplets of Physarum polycephalum*,

Physica D **318-319**, 58 (2016).

A. Zimmermann, S. Kuhn, and M. Richter,*Efficient numerical method for calculating Coulomb coupling elements and its application to two-dimensional spectroscopy*,

Proc. SPIE **9746**, Ultrafast Phenomena and Nanophotonics XX, 97461D (2016).

R. Großmann, F. Peruani, and M. Bär,*Diffusion properties of active particles with directional reversal*,

New J. Phys. **18**, 043009(2016).

M. Schmitt and H. Stark,*Marangoni flow at droplet interfaces: Three-dimensional solution and applications*,

Phys. Fluids **28**, 012106 (2016).

A. Zimmermann, S. Kuhn, and M. Richter,*Poisson Green’s function method for increased computational efficiency in numerical calculations of Coulomb coupling elements*,

Phys. Rev. B **93**, 035308 (2016).

P. Strasberg, G. Schaller, and T. Brandes,*Controlling the stability of steady states in continuous variable quantum systems*,

in Control of Self-Organizing Nonlinear Systems, Springer International Publishing, 289 (2016).

## 2015

L. Jaurigue, B. Lingnau, and K. Lüdge,*Advanced control schemes for passively mode-locked lasers: Coupled lasers and dual-feedback approaches*,

NUSOD 2015, 123 (2015).

M. Raatz, M. Hintsche, M. Bahrs, M. Theves, and C. Beta, *Swimming patterns of a polarly flagellated bacterium in environments of increasing complexity,*

Eur. Phys. J. ST **224**, 1185 (2015).

X. Zhang, J. Hansing, R. R. Netz, J. E. DeRouchey,*Particle Transport through Hydrogels Is Charge Asymmetric*,

Biophys. J. **108**, 530 (2015).

J. Taktikos, Y. T. Lin, H. Stark, N. Biais, and V. Zaburdaev,*Pili-induced clustering of N. gonorrhoeae bacteria*,

PLOS ONE **10**, e0137661 (2015).

O. Pohl and H. Stark,*Self-phoretic active particles interacting by diffusiophoresis: A numerical study of the collapsed state and dynamic clustering*,

Eur. Phys. J. E **38**, 93 (2015).

R. Großmann, F. Peruani, and M. Bär,*A geometric approach to self-propelled motion in isotropic and anisotropic environments*,

Eur. Phys. J. ST **224**, 1377 (2015).

B. Herzog, N. Owschimikow, J.-H. Schulze, R. Rosales, Y. Kaptan, M. Kolarczik, T. Switaiski, A. Strittmatter, D. Bimberg, U. W. Pohl, and U. Woggon,*Fast gain and phase recovery of semiconductor optical amplifiers based on submonolayer quantum dots*,

Appl. Phys. Lett. **107**, 201102 (2015).

P. Kanehl and H. Stark,*Hydrodynamic Segregation in a Bidisperse Colloidal Suspension in Microchannel Flow: A Theoretical Study*,

J. Chem. Phys. **142**, 214901 (2015).

K. Schaar, A. Zöttl, and H. Stark,*Detention times of microswimmers close to surfaces: Influence of hydrodynamic interactions and noise*,

Phys. Rev. Lett. **115**, 038101 (2015).

L. C. Jaurigue, A. S. Pimenov, D. Rachinskii, E. Schöll, K. Lüdge, and A. G. Vladimirov,*Timing jitter of passively mode-locked semiconductor lasers subject to optical feedback; a semi-analytic approach*,

Phys. Rev. A **92**, 053807 (2015).

L. C. Jaurigue, E. Schöll, and K. Lüdge,*Passively mode-locked laser coupled to two external feedback cavities*,

Proc. SPIE 9134, Novel In-Plane Semiconductor Lasers XIV, 93820B (2015).

T. Krause, T. Brandes, M. Esposito and G. Schaller,*Thermodynamics of the polaron master equation at finite bias*,

J. Chem. Phys. **142**, 134106 (2015).

G. E. Topp, T. Brandes, and G. Schaller,*Steady-state thermodynamics of non-interacting transport beyond weak coupling*,

Europhys. Lett. **110**, 67003 (2015).

P. Strasberg, J. Cerrillo, G. Schaller, and T. Brandes,*Thermodynamics of stochastic Turing machines*,

Phys. Rev. E **92**, 042104 (2015).

M. Theves, J. Taktikos, V. Zaburdaev, H. Stark, and C. Beta,*Random walk patterns of a soil bacterium in open and confined environments*,

Europhys. Lett. **109**, 28007 (2015).

J. F. Totz, H. Engel, and O. Steinbock,*Spatial confinement causes lifetime enhancement and expansion of vortex rings with positive filament tension*,

New J, Phys. **17**, 093043 (2015).

J.-T. Kuhr and H. Stark,*Frequency-dependent selection at rough expanding fronts*,

New J. Phys. **17**, 103035 (2015).

R. Großmann, P. Romanczuk, M. Bär, and L. Schimansky-Geier,*Pattern formation in active particle systems due to competing alignment interactions*,

Eur. Phys. J. ST **224**, 1325 (2015).

R. Großmann, F. Peruani, and M. Bär,*A geometric approach to self-propelled motion in isotropic and anisotropic environments*,

Eur. Phys. J. ST **224**, 1377 (2015).

R. Jago, T. Winzer, and E. Malic,*Recombination channels in optically excited graphene*,

Phys. Status Solidi B, 1 (2015).

R. Jago, T. Winzer, A. Knorr, and E. Malic,*Graphene as Gain Medium for Broadband Lasers*,

Phys. Rev. B **92**, 085407 (2015).

M. Kolarczik, N. Owschimikow, B. Herzog, F. Buchholz, Y. I. Kaptan, and U. Woggon,*Exciton dynamics probe the energy structure of a quantum dot-in-a-well system: The role of Coulomb attraction and dimensionality*,

Phys. Rev. B **91**, 235310 (2015).

J. Löber, F. Ziebert, and I. S. Aranson,*Collisions of deformable cells lead to collective migration*,

Sci. Rep. **5**, 9172 (2015).

S. Martens, J. Löber, and H. Engel,*Front propagation in channels with spatially modulated cross section*,

Phys. Rev. E **91**, 022902 (2015).

M. Radszuweit, E. Alvarez-Lacalle, M. Bär, and B. Echebarria,*Cardiac contraction induces discordant alternans and localized block*,

Phys. Rev. E **91**, 022703 (2015).

W. Kopylov, C. Emary, E. Schöll, and T. Brandes,*Time-delayed feedback control of the Dicke–Hepp–Lieb superradiant quantum phase transition*,

New J. Phys. **17**, 013040 (2015).

## 2014

J. Löber, S. Martens, and H. Engel,*Shaping wave patterns in reaction-diffusion systems*,

Phys. Rev. E **90**, 062911 (2014).

G. Schaller, C. Nietner, and T. Brandes,*Relaxation dynamics of meso-reservoirs*,

New J. Phys*.* **16,** 125011 (2014).

J. Löber, R. Coles, J. Siebert, H. Engel, and E. Schöll,*Control of chemical wave propagation*,

Engineering of Chemical Complexity **2**, 185 (2014).

P. Strasberg, G. Schaller, T. Brandes, and C. Jarzynski,*Second laws for an information driven current through a spin valve*,

Phys. Rev. E **90**, 062107 (2014).

N. B. Grosse, N. Owschimikow, R. Aust, B. Lingnau, A. Koltchanov, M. Kolarczik, K. Lüdge, and U. Woggon,*Pump-probe quantum state tomography in a semiconductor optical amplifier*,

Opt. Express **22**, 32520 (2014).

I. S. Aranson, J. Löber, and F. Ziebert,*Phase-field describtion of substrate-based motility of eukaryotic cells*,

Engineering of Chemical Complexity **2**, 93 (2014).

R. Großmann, P. Romanczuk, M. Bär, and L. Schimansky-Geier,*Vortex Arrays and Mesoscale Turbulence of Self-Propelled Particles*,

Phys. Rev. Lett. 113, 258104 (2014).

O. Nagel, C. Guven, M. Theves, M. Driscoll, W. Losert, and C. Beta,*Geometry-driven polarity in motile amoeboid cells*,

PLOS ONE **9** e113382 (2014).

A. Pototsky, U. Thiele, and H. Stark,*Stability of liquid films covered by a carpet of self-propelled surfactant particles*

Phys. Rev. E **90**, 030401(R) (2014).

--highlighted as Editors' suggestion--

C. Otto, L. C. Jaurigue, E. Schöll, and K. Lüdge,*Optimization of Timing Jitter Reduction by Optical Feedback for a Passively Mode-Locked Laser*,

IEEE Photon. J. **6**, 1501814 (2014).

N. Makarava, S. Menz, M. Theves, W. Huisinga, C. Beta, and M. Holschneider,*Quantifying the degree of persistence in random amoeboid motion based on the Hurst exponent of fractional Brownian motion*,

Phys. Rev. E **90**, 042703 (2014).

O. Pohl and H. Stark,*Dynamic clustering and chemotactic collapse of self-phoretic active particles,*Phys. Rev. Lett.

**112**, 238303 (2014).

G. T. Adamashvili, D. J. Kaup, and A. Knorr,*Dissipative solitons of self-induced transparency*,

Phys. Rev. A **90**, 053835 (2014).

L. Jaurigue, E. Schöll, and K. Lüdge,*Passively mode-locked lasers subject to optical feedback: The role of amplitude-phase coupling*,

NUSOD 2014, 147 (2014).

N. Owschimikow, M. Kolarczik, Y. I. Kaptan, N. B. Grosse, and U. Woggon,*Crossed excitons in a semiconductor nanostructure of mixed dimensionality*,

Appl. Phys. Lett.

**105**, 101108 (2014).

G. Schaller, M. Vogl, and T. Brandes,

*,*

Transport as a sensitive indicator of quantum criticality

Transport as a sensitive indicator of quantum criticality

New J. Phys.

**26**, 265001 (2014).

Y. Kaptan, A. Röhm, B. Herzog, B. Lingnau, H. Schmeckebier, D. Arsenijević, V. Mikhelashvili, O. Schöps, M. Kolarczik, G. Eisenstein, D. Bimberg, U. Woggon, N. Owschimikow, and K. Lüdge,*Stability of quantum-dot excited-state laser emission under simultaneous ground-state perturbation,*Appl. Phys. Lett.

**105**, 191105 (2014).

M. Radszuweit, H. Engel, and M. Bär, *An active poroelastic model for mechanochemical patterns in protoplasmic droplets of Physarum polycephalum*,

PLOS ONE **9**, e99220 (2014).

L. Jaurigue, F. Grillot, E. Schöll, and K. Lüdge,*Predicting modes of operation in quantum dot mode-locked lasers using a delay differential equation model*,

Proc. SPIE 9134, Semiconductor Lasers and Laser Dynamics VI, 91342K (2014).

S. Heidenreich, S. H. L. Klapp, and M. Bär,*Numerical simulations of a minimal model for the fluid dynamics of dense bacterial suspensions*,

J. Phys.: Conf. Ser. **490**, 012126 (2014).

J. Löber, F. Ziebert, and I. S. Aranson, *Modeling crawling cell movement on soft engineered substrates*,

Soft Matter **10**, 1365 (2014).

C. Leonhardt, G. Schwake, T. R. Stögbauer, S. Rappl, J.-T. Kuhr, T. S. Ligon, and J. O. Rädler,*Single-cell mRNA transfection studies: Delivery, kinetics and statistics by numbers*,

Nanomedicine **10**, 679 (2014).

--featured article & front cover--

S. C. Kuhn, A. Knorr, M. Richter, N. Owschimikow, M. Kolarczik, Y. I. Kaptan, and U. Woggon,*All-optical approach to determine the spatial shape of nanoscale electron wave functions using intraband spectroscopy*,

Phys. Rev. B **89**, 201414(R) (2014).

Y. Kaptan, H. Schmeckebier, B. Herzog, D. Arsenijevic, M. Kolarczik, V. Mikhelashvili, N. Owschimikow, G. Eisenstein, D. Bimberg, and U. Woggon,*Gain dynamics of quantum dot devices for dual-state operation,*Appl. Phys. Lett.

**104**, 261108 (2014).

M. Hennes, K. Wolff, and H. Stark,*Self-induced polar order of active Brownian particles in a harmonic trap*,

Phys. Rev. Lett. **112**, 238104 (2014).

M. Benito, A. Gómez-León, V. M. Bastidas, T. Brandes, and G. Platero,*Floquet engineering of long-range p-wave superconductivity,*Phys. Rev. B

**90**, 205127 (2014).

L. Jaurigue, K. Lüdge, and E. Schöll,*Impact of amplitude-phase coupling on optical feedback induced timing jitter reduction in passively mode-locked lasers,*

Laser Optics, 2014 International Conference.

J. Löber and H. Engel, *Controlling the position of traveling waves in reaction-diffusion systems*,

Phys. Rev. Lett. **112**, 148305 (2014).

A. Zöttl and H. Stark,*Hydrodynamics determines collective motion and phase behavior of active colloids*,

Phys. Rev. Lett.

**112**, 118101 (2014).

-- appeared as editor's suggestion --

F. G. Gallego-Marcos, G. Platero, C. Nietner, G. Schaller, and T. Brandes,*Nonequilibrium relaxation transport of ultracold atoms*,

Phys. Rev. A

**90**033614 (2014).

J. Löber,*Stability of position control of traveling waves in reaction-diffusion systems*,

Phys. Rev. E **89**, 062904 (2014).

G. Schaller,*Open Quantum Systems Far from Equilibrium*,

Springer Lecture Notes in Physics

**881**, Springer (2014).

V. M. Bastidas, P. Perez-Fernandez, M. Vogl, and T. Brandes,*Quantum Criticality and Dynamical Instability in the Kicked-Top Model*,

Phys. Rev. Lett. **112** 140408 (2014).

C. Otto,*Dynamics of Quantum Dot Lasers*,

Springer (2014).

C. Nietner, G. Schaller, T. Brandes,*Transport with ultracold atoms at constant density,*Phys. Rev. A

**89**, 013605 (2014).

## 2013

J. Löber and H. Engel,*Analytical approximations for spiral waves*,

Chaos **23**, 043135 (2013).

P. Strasberg, G. Schaller, T. Brandes, M. Esposito*,Thermodynamics of quantum-jump-conditioned feedback control*,

Phys. Rev. E

**88**, 062107 (2013).

P. V. Paulau, J. Löber, and H. Engel,*Stabilization of a scroll ring by a cylindrical Neumann boundary*,

Phys. Rev. E **88**, 062917 (2013).

L. D. Contreras-Pulido, C. Emary, T. Brandes, and R. Aguado,

Non-equilibrium correlations and entanglement in a semiconductor hybrid circuit-QED system,

New J. Phys. **15**, 095008 (2013).

A. B. Bhattacherjee and T. Brandes,*Phonon Laser Effect and Dicke-Hepp-Lieb Superradiant Phase Transition in Magnetic Cantilever Coupled to a Bose Einstein Condensate*,

Can. J. Phys. **91**, 639 (2013).

G. Engelhardt, V. M. Bastidas, C. Emary, and T. Brandes,*AC-driven Quantum Phase Transition in the Lipkin-Meshkov-Glick Model*,

Phys. Rev. E **87**, 052110 (2013).

G. Schaller, T. Krause, T. Brandes, and M. Esposito,*Single electron transistor strongly coupled to vibrations: Counting Statistics and Fluctuation Theorem,*New J. Phys.

**15**, 033032 (2013).

W. Kopylov, C. Emary, and T. Brandes,*Counting statistics of the Dicke superradiance phase transition*,

Phys. Rev. A **87**, 043840 (2013).

P. Strasberg, G. Schaller, T. Brandes, and M. Esposito,*Thermodynamics of a physical model implementing a Maxwell demon,*Phys. Rev. Lett.

**110**, 040601 (2013).

D. Strehober, E. Schöll, and S. H. L. Klapp,*Feedback control of flow alignment in sheared liquid crystals*,

Phys. Rev. E **88**, 062509 (2013).

T. A. Vezirov and S. H. L. Klapp,*Non-equilibrium dynamics of a confined colloidal bilayer in planar shear flow*,

Phys. Rev. E **88**, 052307 (2013).

S. Alonso and M. Bär,*Wave Propagation in Excitable Media Through Randomly Distributed Heterogeneities: Simulations and Comparison to the Effective Medium Theory*,

ESAIM: Proceedings **3****9**, 7(2013).

S. Alonso, M. Bär, and A.V. Panfilov,*Negative tension of scroll wave filaments and turbulence in three-dimensional excitable media and application in cardiac dynamics*,

Bulletin of mathematical biology **75**, 1351 (2013).

J. Taktikos, H. Stark, and V. Zaburdaev,*How the Motility Pattern of Bacteria Affects Their Dispersal and Chemotaxis*,

PLOS ONE **8**, e81936 (2013).

Z. Zhang, H. Stark, and A.S. Mikhailov,*Hydrodynamic ratchet: Controlled motion of a polymer in analternating microchannel flow*,

Europhys. Lett. **104**, 14002 (2013).

M. Kolarczik, N. Owschimikow, J. Korn, B. Lingnau, Y. Kaptan, D. Bimberg, E. Schöll, K. Lüdge, and U. Woggon, *Quantum coherence induces pulse shape modification in a semiconductor optical amplifier at room temperature,*

Nat. Commun. **4**, 2953 (2013).

D. A. Strehober, H. Engel, and S. H. L. Klapp,*Oscillatory motion of sheared nanorods beyond the nematic phase*,

Phys. Rev. **E 88**, 012505 (2013).

M. Theves, J. Taktikos, V. Zaburdaev, H. Stark, and C. Beta,

*A bacterial swimmer with two alternating speeds of propagation,*

Biophys. J. **105**, 1915 (2013).

S. Reddig and H. Stark,*Nonlinear dynamics of spherical particles in Poiseuille flow under creeping-flow condition*,

J. Chem. Phys.** 138**, 234902, (2013)*.*

F. Peruani and M. Bär,*A kinetic model and scaling properties for non-equilibrium clustering of self-propelled particles*,

New. J. Phys.** 15,** 065009 (2013).

H. Schmidle, S. Jäger, C. K. Hall, O. D. Velev, and S. H. Klapp,*Two-dimensional colloidal networks induced by a uni-axial external field*,

Soft Matter **9**, 2518 (2013).

J. Dunkel, S. Heidenreich, K. Drescher, H. H. Wensink, M. Bär, and R. E. Goldstein,*Fluid dynamics of bacterial turbulence*,

Phys. Rev. Lett. **110**, 228102 (2013).

C. Pöltl, C. Emary, and T. Brandes,*Spin entangled two-particle dark state in quantum transport through coupled quantum dots*,

Phys. Rev. B **87**, 045416 (2013).

M.-J. Huang, R. Kapral, A. S. Mikhailov, and H.-Y. Che,*Coarse-grain simulations of active molecular machines in lipid bilayers*,

J. Chem. Phys. 138, 195101 (2013).

--Front Cover Page--

R. Vogel and H. Stark,*Rotation-induced polymorphic transitions in bacterial flagella*,

Phys. Ref. Lett.

**110**, 158104 (2013).

J. Dunkel, S. Heidenreich, M. Bär, and R. E. Goldstein, *Minimal continuum theories of structure formation in dense active fluids*,

New J. Phys. **15**, 045016 (2013).

K. Wolff, A. Hahn, H. Stark,*Sedimentation and orientational order of active bottomheavy particles*,

Eur. Phys. J. E **36**, 43 (2013).

A. Pototsky, A. Hahn, and Holger Stark,*Rectification of self-propelled particles by symmetric barriers*,

Phys. Rev. E **87**, 042124 (2013).

S. Jäger, H. Stark, and S. H. L. Klapp,*Dynamics of cluster formation in driven dipolar colloids dispersed on a monolayer*,

J. Phys.: Condens. Matter 25, 195104 (2013).

M. Radszuweit, S. Alonso, H. Engel, and M. Bär,*Intracellular mechanochemical waves in an active poroelastic model*,

Phys. Rev. Lett. **110**, 138102 (2013).

A. Zöttl and H. Stark,*Periodic and Quasiperiodic Motion of an Elongated Microswimmer in Poiseuille Flow*,

Eur. Phys. J. E** 36**, 4 (2013).

M. Zieringer, M. Casas Cartagena, E. Burakowska, J. Taktikos, K. Neuthe, H. Bandmann, F.-G. Klrner, and R. Haag,*Polyglycerol-Tagged Molecular Clips as Receptors in Protic Solvents*,

Eur. J. Org. Chem. **2013**, 362 (2013).

## 2012

C. Otto, K. Lüdge, A.G. Vladimirov, M. Wolfrum, and E. Schöll,*Delay induced dynamics and jitter reduction of passively mode-locked semiconductor laser subject to optical feedback,*New J. Phys.

**14**, 113033 (2012).

K. Mosshammer, G. Kießlich, and T. Brandes,*Transport and semiclassical dynamics of coupled quantum dots interacting with a local magnetic moment*,

Phys. Rev. B **86**, 165447 (2012).

A. Metelmann and T. Brandes,*Transport through single-level systems: spin-dynamics in the nonadiabatic regime*,

Phys. Rev. B. **86**, 245317 (2012).

C. Nietner, G. Schaller, C. Pöltl, T. Brandes,*Dynamics of interacting transport qubits*,

Phys. Rev. B **85**, 245431 (2012).

S. H. L. Klapp,*Materials science: Synchronized tumbling particles*,

Nature **491**, 530 (2012).

G. Anselem, M. Theves, A. Bae, C. Beta, and E. Bodenschatz,*Control Parameter Description of Eukaryotic Chemotaxis*,

Phys. Rev. Lett. **109**, 108103 (2012).

S. Jäger and S. H. L. Klapp,*Rotational ratchets with dipolar interactions*,

Phys. Rev. E **86**, 061402 (2012).

S. Jäger, H. Schmidle, and S. H. L. Klapp,*Nonequilibrium condensation and coarsening of field-driven dipolar colloids*,

Phys. Rev. E **86**, 011402 (2012).

S. Kuhn, F. Schulze, M. Richter, A. Knorr, and A. Carmele,*Theory of** phonon-assisted intraband transitions in semiconductor quantum dots*,

Proc. SPIE **8260**, 826004 (2012).

A. Carmele, M.-R. Dachner, J. Kabuss, M. Richter, F. Milde, and A.Knorr,*Photon statistics and entanglement in phonon-assisted quantum light emission from semiconductor quantum dots, *in* Quantum Optics with Semiconductor Nanostructures*,

Woodhead Publishing, (2012).

K. Ly, C. Köhler, A. Fischer, J. Kabuss, F. Schlosser, M. Schoth, A. Knorr, and I. M. Weidinger,*Induced surface enhancement in coral Pt island films attached to nanostructured Ag electrodes*,

Langmuir **28**, 5819 (2012).

S. B. Babu and H. Stark,*Modeling the locomotion of the African trypanosome using multiparticle collision dynamics*,

New J. Phys. **14**, 085012 (2012).

J. Löber, M. Bär, and H. Engel,

Front propagation in one-dimensional spatially periodic bistable media,

Phys. Rev. E **86**, 066210 (2012).

J. Starruß, F. Peruani, V. Jakovljevic, L. Søgaard-Andersen, A. Deutsch, and M. Bär,*Pattern-formation mechanisms in motility mutants of* Myxococcus xanthus,

Interface Focus **2**, 774 (2012).

M.-R. Dachner, P. Paulau, H. Engel, and A. Knorr,*Stable rectangular pulses supported by a quantum dot optical amplifier*,

Phys. Status Solidi RRL **6**(12), 463 (2012).

-- back cover --

M.-J. Huang, H.-Y. Chen, and A. S. Mikhailov,*Nano-Swimmers in Biological Membranes and Propulsion Hydrodynamics in Two Dimensions*,

Eur. Phys. J. E **35**, 119 (2012).

M. Düttmann, M. Mittnenzweig, Y. Togashi, T. Yanagida, A. S. Mikhailov,*Complex Intramolecular Mechanics of G-actin — An Elastic Network Study*,

PLOS ONE **7**(10), e45859 (2012).

M.-J. Huang, R. Kapral, A. S. Mikhailov, and H.-Y. Chen,*Coarse-grain model for lipid bilayer self-assembly and dynamics: Multiparticle collision description of the solvent,*J. Chem. Phys.

**137**, 055101 (2012)

*.*

M. Vogl, G. Schaller, E. Schöll, and T. Brandes,

*Equation-of-motion method for full counting statistics: Steady-state superradiance*,

Phys. Rev. A

**86**, 033820 (2012).

M. Vogl, G. Schaller, and T. Brandes, *Criticality in transport through the quantum Ising chain*,

Phys. Rev. Lett. **109**, 240402 (2012).

K. Wolff, D. Marenduzzo, and M. E. Cates,*Cytoplasmic streaming in plant cells: the role of wall slip*,

J. R. S. Interface **9**, 1398 (2012).

J. Taktikos, V. Zabrudaev, and H. Stark,*Collective dynamics of model microorganisms with chemotactic signaling*,

Phys. Rev. E **85**, 051901** **(2012).

A. Pototsky and H. Stark,*Active brownian particles in two-dimensional optical traps*,

Europhys. Lett. **98, **50004** **(2012).

F. Kendelbacher and H. Stark,*Syncronization via hydrodynamic interactions*, in*Engineering of Chemical Complexity, *

edited by G. Ertl and A. S. Mikhailov, World Scientific, Singapore (2012).

A. Zöttl and H. Stark,*Nonlinear dynamics of a microswimmer in Poiseuille flow*,

Phys. Rev. Lett. **108**, 218104** **(2012).

E. K. B. Pfannes, M. Theves, C. Wegner, and C. Beta, *Impact of carbazole derivative wiskostatin on mechanical stability and dynamics of motile cells*,

J. Muscle Res. Cell Motil. **33**, 95 (2012).

G. Amselem, M. Theves, A. Bae, E. Bodenschatz, and C. Beta,*A stochastic description of Dictyostelium chemotaxis*,

PLOS ONE **7**(5): e37213 (2012).

O. A. Dyatlova, C. Köhler, E. Malic, J. Gomis-Bresco, J. Maultzsch, A. Tsagan-Mandzhiev, T. Watermann, A. Knorr, and U. Woggon,*Ultrafast relaxation dynamics via acoustic phonons in carbon nanotubes*,

Nano Lett. **12**, 2249 (2012).

M. Schoth, M. Richter, A. Knorr, and T. Renger,*Line narrowing of excited state transitions in nonlinear polarization spectroscopy:application to water-soluble Chlorophyll-binding protein*,

Phys. Rev. Lett. **108**, 178104 (2012).

C. Lopez-Monis, C. Emary, G. Kiesslich, G. Platero, and T. Brandes,*Limit-cycles and chaos in the current through a quantum dot*,

Phys. Rev. B **85**, 045301 (2012).

C. Emary, C. Pöltl, A. Carmele, J. Kabuss, A. Knorr, and T. Brandes,*Bunching and antibunching in electronic transport*,

Phys. Rev. B **85**, 165417 (2012).

B. Globisch, C. Otto, K. Lüdge, and E. Schöll,*Influence of carrier lifetimes on **the dynamical* *behaviour of quantum-dot lasers subject to optical feedback,*

Phys. Rev. E **86**, 046201 (2012).

J. Pausch, C. Otto, E. Tylaite, N. Majer, E. Schöll, and K. Lüdge,*Optically injected quantum dot lasers - impact of nonlinear carrier lifetimes on frequency locking dynamics *,

New. J. Phys. **14**, 053018 (2012).

C. Otto, B. Globisch, K. Lüdge, E. Schöll, and T. Erneux,*Complex dynamics of semiconductor quantum dot lasers subject to delayed optical feedback*,

Int. J. Bif. Chaos **22**(10), 1250246 (2012).

F. Peruani, J. Starruss, V. Jakovljevic, L. Sogaard-Andersen, A. Deutsch, and M. Bär,*Collective motion and nonequilibrium cluster formation in colonies of gliding bacteria*,

Phys. Rev. Lett. **108**, 098102 (2012).

P. Romanczuk, M. Bär, W. Ebeling, B. Lindner, and L. Schimansky-Geier,*Active brownian particles: from individual to collective stochastic dynamics*,

Eur. Phys. J. ST **202**, 1 (2012).

M. Düttmann, Y. Togashi, T. Yanagida, and A. S. Mikhailov, *Myosin-V as a Mechanical Sensor: An Elastic Network Study*,

Biophys. J. **102**, 541 (2012).

J. Zimmermann, C. Brunner, M. Enculescu, M. Gogler, A. Ehrlicher, J. Käs, and M. Falcke,*Actin Filament Elasticity and Retrograde Flow Shape the Force-Velocity Relation of Motile Cells,*

Biophys. J. **102**, 287 (2012).

J. P. Dreier, T. M. Isele, C. Reiffurth, S. A. Kirov, M. A. Dahlem, and O. Herreras,*Is spreading depolarization characterized by an abrupt, massive release of gibbs free energy from the human brain cortex?*,

Neuroscientist **19**, 25 (2012).

M. Esposito and G. Schaller,*Stochastic Thermodynamics for “Maxwell demon” feedbacks*,

Europhys. Lett. **99**, 30003 (2012).

G. Schaller,*Fighting decoherence by feedback-controlled dissipation*,

Phys. Rev. A **85**, 062118 (2012).

## 2011

M. Hayn, C. Emary, and T. Brandes,*Phase transitions and dark-state physics in two-color superradiance*,

Phys. Rev. A. **84**, 053856 (2011).

G. Kießlich, G. Schaller, C. Emary, and T. Brandes,*Charge Qubit Purification by an Electronic Feedback Loop*,

Phys. Rev. Lett. **107**, 050501 (2011).

T. Krause, G. Schaller, and T. Brandes,*Incomplete current fluctuation theorems for a four-terminal model*,

Phys. Rev. B **84**, 195113 (2011).

A. Metelmann and T. Brandes,*Adiabaticity in semiclassical nanoelectromechanical systems*,

Phys. Rev. B **84**, 155455 (2011).

F. Schulze, M. Schoth, U. Woggon, A. Knorr, and C. Weber,*Ultrafast dynamics of carrier multiplication in quantum dots*,

Phys. Rev. B **84**, 125318 (2011).

S. Reddig and H. Stark*,Cross-streamline migration of a semiflexible polymer in a pressure driven flow*,

J. Chem. Phys.

**135**, 165101 (2011).

V. Zaburdaev, S. Uppaluri, T. Pfohl, M. Engstler, R. Friedrich, and H. Stark, *Langevin dynamics deciphers the motility pattern of swimming parasites,*

Phys. Rev. Lett. **106**, 208103 (2011).

C. Otto, K. Lüdge, E. A. Viktorov, and T. Erneux,*Quantum dot laser tolerance to optical feedback,*

chap. 6, pp. 141-162 in *Nonlinear Laser Dynamics - From* *Quantum Dots to Cryptography,* edited by K. Lüdge, WILEY-VHC, Weinheim (2011)*.*

B. Echebarria, G. Röder, H. Engel, J. Davidsen, and M. Bär,*Supernormal conduction in cardiac tissue promotes concordant alternans and action potential bunching*,

Phys. Rev. E **83**, 040902 (2011).

S. Alonso, M. Bär, and A. V. Panfilov,*Effects of discrete coupling on filament tension in excitable media,*

Chaos **21**, 013118 (2011).

F. Peruani, L. Schimansky-Geier, and M. Bär,*Cluster dynamics and cluster size distributions in systems of self propelled particles,*

Eur. Phys. J. ST **191**, 173 (2011).

F. Schulze, M. Schoth, U. Woggon, A. Knorr, and C. Weber, *Ultrafast dynamics of carrier multiplication in quantum dots,*

Phys. Rev. B **84**, 125328 (2011).

J. Taktikos, V. Zaburdaev, and H. Stark,

*Modeling a self-propelled autochemotactic walker*,

Phys. Rev. E **84**, 041924 (2011).

C. Pöltl, C. Emary, and T. Brandes,

*Feedback stabilization of pure states in quantum transport*,

Phys. Rev. B **84**, 085302 (2011).

M. Enculescu and H. Stark,*Active colloidal suspensions exhibit polar order under gravity*,

Phys. Rev. Lett. **107**, 058301 (2011).

-- appeared as editor's suggestion --

M. Vogl, G. Schaller, and T. Brandes,

Counting statistics of collective photon transmissions,

Ann. Phys. **326**, 2827 (2011).

S. Jäger and S. H. L. Klapp,*Pattern formation of dipolar colloids in rotating fields: Layering and synchronization,*

Soft Matter **7**, 6606 (2011).

S. Jäger and S. H. L. Klapp,*Non-equilibrium structure of rotationally driven dipoles: The role of the simulation method*,

Magnetohydrodynamics **47**, 135 (2011).

J. Jordanovic, S. Jäger, and S. H. L. Klapp,*Crossover from Normal to Anomalous Diffusion in Systems of Field-Aligned Dipolar Particles*,

Phys. Rev. Lett. **106**, 038301 (2011).

C. Wollin and H. Stark,*Metachronal waves in a chain of rowers with hydrodynamic interactions*,

Eur. Phys. J. E **34**, 42 (2011).

S. Hughes, P. Yao, F. Milde, A. Knorr, D. Dalacu, K. Mnaymneh, V. Sazonova, P. J. Poole, G. C. Aers, J. Lapointe, R. Cheriton, and R. L. Williams,*Influence of electron-acoustic phonon scattering on off-resonant cavity feeding within a strongly coupled quantum-dot cavity system*,

Phys. Rev. B **83**, 165313 (2011).

M. Faber, M. Enculescu, and M. Falcke,*Filament capping and nucleation in actin-based motility*,

Eur. Phys. J. ST **191**, 147 (2011).

M. Enculescu and M. Falcke,*Actin-based propulsion of spatially extended objects*,

New J. Phys. **13**, 053040 (2011).

A. Grimm and H. Stark,*Hydrodynamic interactions enhance the performance of Brownian ratchets*,

Soft Matter **7**, 3219 (2011).

J. E. Kim, M.-R. Dachner, A. Wilms, M. Richter, and E. Malic,*Microscopic study of relaxation oscillations in quantum-dot VCSELs*,

Phot. Nano. Fund. Appl. **9**, 337 (2011).

G. Schaller, C. Emary, G. Kießlich, and T. Brandes,*Probing the power of an electronic Maxwell Demon: Single-electron transistor monitored by a quantum point contact*,

Phys. Rev. B **84**, 085418 (2011).

*Quantum Equilibration under Constraints and Transport Balance*,

Phys. Rev. E

**83**, 031111 (2011).

## 2010

R. Hussein, A. Metelmann, P. Zedler, and T. Brandes,*Semiclassical dynamics of nanoelectromechanical systems*,

Phys. Rev. B **82**, 165406 (2010).

S. Fruhner, H. Engel and M. Bär,*Electrical excitation of the human heart and the effect of contraction,*

Proc. ESGCO **2010**, (2010).

C. Speier, R. Vogel, and H. Stark,*Modeling the bacterial flagellum by an elastic network of rigid bodies,*

Phys. Biol. **8**, 046009 (2011).

A. M. Hahn and H. Then,*Measuring the convergence of Monte Carlo free energy calculations*,

Phys. Rev. E **81**, 041117 (2010).

H. Stark,*Zähe Schwimmer,*

Physik Journal **9** (5), 16 (2010).

J.-J. Liang, C. Emary, and T. Brandes,*Quantum impurity models with the Coupled Cluster Method*,

Commun. Theor. Phys. **54**, 509 (2010).

F. Ginelli, F. Peruani, M. Bär, and H. Chate,*Large scale properties of self-propelled rods*,

Phys. Rev. Lett. **104**, 184502 (2010).

S. Alonso, J. Löber, M. Bär, and H. Engel,*Wave propagation in heterogeneous bistable and excitable media*,

Eur. Phys. J. ST **187**, 31 (2010).

T. Winzer, A. Knorr, and E. Malic,*Carrier Multiplication in Graphene*,

Nano Lett. **10**, 4839 (2010).

A. Carmele, M. Richter, W. W. Chow, and A. Knorr,*Antibunching of Thermal Radiation by a Room-Temperature Phonon Bath: A Numerically Solvable Model for a Strongly Interacting Light-Matter-Reservoir System*,

Phys. Rev. Lett.

**104**, 156801 (2010).

M. Vogl, G. Schaller, and T. Brandes,

*Speed of Markovian relaxation toward the ground state*,

Phys. Rev. A

**81**, 012102 (2010).

J. Zimmermann, M. Enculescu, and M. Falcke,

*Leading-edge-gel coupling in lamellipodium motion*,

Phys. Rev. E

**82**, 051925 (2010).

M. Radszuweit, H. Engel, and M. Bär,

*A model for oscillations and pattern formation in protoplasmic droplets of Physarum polycephalum*,

Eur. Phys. J. ST

**191**, 159 (2010).

S. Fruhner, H. Engel, and M. Bär,

*Modelling the influence of cardiac motion on electrical excitation and the magnetocardiogram,*

**Comput. Cardiol.**

**37**, 867 (2010).

M. Enculescu, M. Sabouri-Ghomi, G. Danuser, and M. Falcke,*Modeling of Protrusion Phenotypes Driven by the Actin-Membrane Interaction*, Biophys. J. **98**, 1571 (2010).

G. Schaller, G. Kießlich, and T. Brandes,*Counting Statistics in Multistable Systems*,

Phys. Rev. B **81**, 205305 (2010).

G. Schaller, G. Kießlich, and T. Brandes,*Low-dimensional detector model for full counting statistics: Trajectories, back action, and fidelity*,

Phys. Rev. B **82**, 041303(R) (2010).

## 2009

C. Pöltl, C.Emary, and T. Brandes,*Two-particle dark state in the transport through a triple quantum dot*,

Phys. Rev. B **80**, 115313 (2009).

M. Schmiedeberg, V. Y Zabrudaev, and H. Stark,*On moments and scaling regimes in anomalous random walks*,

J. Stat. Mech. P12020** **(2009).

H. Stark,*Algentanz im Walzertakt: Zilien von Mikroorganismen erzeugen eine nichtlineare Dynamik in zäher Umgebung*,

Physik Journal **8 **(7), 18 (2009).

C. Emary, C. Pöltl, and T. Brandes,

Three level mixing and dark states in transport through quantum dots,

Phys. Rev. B **80**, 235321 (2009).

A. M. Hahn and H. Then,*Characteristic of Bennett's Acceptance Ratio Method*,

Phys. Rev. B **80**, 031111 (2009).

J. Taktikos and H. Behringer,*Dry and wet interfaces: Influence of solvent particles on molecular recognition*,

Phys. Rev. E 79, 041908 (2009).

G. Kießlich, G. Schaller, C. Emary, and T. Brandes,*Single spin transport spectroscopy: Current blockade and spin decay*,

Appl. Phys. Lett. **95**, 152104, (2009).

G. Schaller, G. Kießlich, and T. Brandes,*Transport Statistics of Interacting Double Dot Systems: Coherent and Non-Markovian Effects*,

Phys. Rev. B **80**, 245107 (2009).

G. Schaller, P. Zedler, and T. Brandes,*Systematic Perturbation Theory for Dynamical Coarse-Graining*,

Phys. Rev. A **79**, 032110, (2009).

P. Zedler, G. Schaller, G. Kießlich, C. Emary, and T. Brandes,*Weak coupling approximations in non-Markovian Transport*,

Phys. Rev. B **80**, 045309, (2009).